PoplarV1, Main, Exploration, bibRecord, 001C48

Microbacterium populi sp. nov., isolated from Populus×euramericana bark.

Identifieur interne : 001C48 ( Main/Exploration ); précédent : 001C47; suivant : 001C49

Microbacterium populi sp. nov., isolated from Populus×euramericana bark.

Auteurs : Yong Li [République populaire de Chine] ; Tao Wang [République populaire de Chine] ; Wei Fang [République populaire de Chine] ; Han Xue [République populaire de Chine] ; Chun-Gen Piao [République populaire de Chine] ; Min-Wei Guo [République populaire de Chine] ; Tian-Hui Zhu [République populaire de Chine]

Source :

International journal of systematic and evolutionary microbiology [ 1466-5034 ] ; 2015.

RBID : pubmed:25678677

Descripteurs français

KwdFr :
- ADN bactérien (génétique), ARN ribosomique 16S (génétique), Acides gras (composition chimique), Actinomycetales (classification), Actinomycetales (génétique), Actinomycetales (isolement et purification), Analyse de séquence d'ADN (MeSH), Chine (MeSH), Composition en bases nucléiques (MeSH), Données de séquences moléculaires (MeSH), Hybridation d'acides nucléiques (MeSH), Peptidoglycane (composition chimique), Phylogenèse (MeSH), Populus (microbiologie), Techniques de typage bactérien (MeSH), Vitamine K2 (composition chimique), Écorce (microbiologie).
MESH :
- composition chimique : Acides gras, Actinomycetales, Peptidoglycane, Vitamine K2.
- génétique : ADN bactérien, ARN ribosomique 16S, Actinomycetales.
- isolement et purification : Actinomycetales.
- microbiologie : Populus, Écorce.
- Analyse de séquence d'ADN, Chine, Composition en bases nucléiques, Données de séquences moléculaires, Hybridation d'acides nucléiques, Phylogenèse, Techniques de typage bactérien.

English descriptors

KwdEn :
- Actinomycetales (classification), Actinomycetales (genetics), Actinomycetales (isolation & purification), Bacterial Typing Techniques (MeSH), Base Composition (MeSH), China (MeSH), DNA, Bacterial (genetics), Fatty Acids (chemistry), Molecular Sequence Data (MeSH), Nucleic Acid Hybridization (MeSH), Peptidoglycan (chemistry), Phylogeny (MeSH), Plant Bark (microbiology), Populus (microbiology), RNA, Ribosomal, 16S (genetics), Sequence Analysis, DNA (MeSH), Vitamin K 2 (chemistry).
MESH :
- chemical , chemistry : Fatty Acids, Peptidoglycan, Vitamin K 2.
- chemical , genetics : DNA, Bacterial, RNA, Ribosomal, 16S.
- classification : Actinomycetales.
- genetics : Actinomycetales.
- isolation & purification : Actinomycetales.
- microbiology : Plant Bark, Populus.
- Bacterial Typing Techniques, Base Composition, China, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Sequence Analysis, DNA.

Abstract

Five non-spore-forming, aerobic and Gram-stain-positive bacterial strains, 10-107-8(T), 1C-4, NHI3_6, 4107_1_2, and 3D-3, were isolated from Populus × euramericana bark collected in Puyang City, Henan Province, PR China. The isolates grew at 15-40 °C and pH 5-10. The optimum temperature and pH for growth were 30 °C and pH 8.0, respectively. Chemotaxonomic features included MK-10 and MK-11 as major menaquinones (type strain); predominating iso- and anteiso-branched cellular fatty acids; diphosphatidylglycerol and phosphatidylglycerol as major polar lipids (type strain); ornithine as the principal diamino acid of the cell-wall peptidoglycan (type strain); glycolyl type as cell-wall acyl type; and DNA G+C content of 66.8-67.6 mol%. These features were consistent with classification in the genus Microbacterium . Analysis of 16S rRNA gene sequence data indicated that the five isolates belonged to the genus Microbacterium and were closely related to Microbacterium halotolerans . A high 16S rRNA gene sequence similarity of 96.97% to M. halotolerans YIM 70130(T) was observed. The five isolates showed less than 96.20% 16S rRNA gene sequence similarity to the other species of the genus Microbacterium with validly published names. DNA-DNA relatedness of the five isolates with M. halotolerans JCM 13013(T) ranged from 35.62% to 44.36%. Considering the results of 16S rRNA gene sequence analysis and the physiological and biochemical characteristics, we propose that the five strains should be assigned to a novel species of the genus Microbacterium . The name proposed for the five strains is Microbacterium populi sp. nov., and the type strain is 10-107-8(T) ( =CFCC 11275(T) =KCTC 29152(T)).

DOI: 10.1099/ijs.0.000117
PubMed: 25678677

Affiliations:

Links toward previous steps (curation, corpus...)

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Le document en format XML

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<term>Actinomycetales (isolation & purification)</term>
<term>Bacterial Typing Techniques (MeSH)</term>
<term>Base Composition (MeSH)</term>
<term>China (MeSH)</term>
<term>DNA, Bacterial (genetics)</term>
<term>Fatty Acids (chemistry)</term>
<term>Molecular Sequence Data (MeSH)</term>
<term>Nucleic Acid Hybridization (MeSH)</term>
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<term>Phylogeny (MeSH)</term>
<term>Plant Bark (microbiology)</term>
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<term>Actinomycetales (classification)</term>
<term>Actinomycetales (génétique)</term>
<term>Actinomycetales (isolement et purification)</term>
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<term>Composition en bases nucléiques (MeSH)</term>
<term>Données de séquences moléculaires (MeSH)</term>
<term>Hybridation d'acides nucléiques (MeSH)</term>
<term>Peptidoglycane (composition chimique)</term>
<term>Phylogenèse (MeSH)</term>
<term>Populus (microbiologie)</term>
<term>Techniques de typage bactérien (MeSH)</term>
<term>Vitamine K2 (composition chimique)</term>
<term>Écorce (microbiologie)</term>
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<term>Vitamin K 2</term>
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<term>Écorce</term>
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<front><div type="abstract" xml:lang="en">Five non-spore-forming, aerobic and Gram-stain-positive bacterial strains, 10-107-8(T), 1C-4, NHI3_6, 4107_1_2, and 3D-3, were isolated from Populus × euramericana bark collected in Puyang City, Henan Province, PR China. The isolates grew at 15-40 °C and pH 5-10. The optimum temperature and pH for growth were 30 °C and pH 8.0, respectively. Chemotaxonomic features included MK-10 and MK-11 as major menaquinones (type strain); predominating iso- and anteiso-branched cellular fatty acids; diphosphatidylglycerol and phosphatidylglycerol as major polar lipids (type strain); ornithine as the principal diamino acid of the cell-wall peptidoglycan (type strain); glycolyl type as cell-wall acyl type; and DNA G+C content of 66.8-67.6 mol%. These features were consistent with classification in the genus Microbacterium . Analysis of 16S rRNA gene sequence data indicated that the five isolates belonged to the genus Microbacterium and were closely related to Microbacterium halotolerans . A high 16S rRNA gene sequence similarity of 96.97% to M. halotolerans YIM 70130(T) was observed. The five isolates showed less than 96.20% 16S rRNA gene sequence similarity to the other species of the genus Microbacterium with validly published names. DNA-DNA relatedness of the five isolates with M. halotolerans JCM 13013(T) ranged from 35.62% to 44.36%. Considering the results of 16S rRNA gene sequence analysis and the physiological and biochemical characteristics, we propose that the five strains should be assigned to a novel species of the genus Microbacterium . The name proposed for the five strains is Microbacterium populi sp. nov., and the type strain is 10-107-8(T) ( =CFCC 11275(T) =KCTC 29152(T)).</div>
</front>
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<DateCompleted><Year>2015</Year>
<Month>10</Month>
<Day>02</Day>
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<DateRevised><Year>2020</Year>
<Month>08</Month>
<Day>27</Day>
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<JournalIssue CitedMedium="Internet"><Volume>65</Volume>
<Issue>Pt 5</Issue>
<PubDate><Year>2015</Year>
<Month>May</Month>
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<Title>International journal of systematic and evolutionary microbiology</Title>
<ISOAbbreviation>Int J Syst Evol Microbiol</ISOAbbreviation>
</Journal>
<ArticleTitle>Microbacterium populi sp. nov., isolated from Populus×euramericana bark.</ArticleTitle>
<Pagination><MedlinePgn>1444-1449</MedlinePgn>
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<ELocationID EIdType="doi" ValidYN="Y">10.1099/ijs.0.000117</ELocationID>
<Abstract><AbstractText>Five non-spore-forming, aerobic and Gram-stain-positive bacterial strains, 10-107-8(T), 1C-4, NHI3_6, 4107_1_2, and 3D-3, were isolated from Populus × euramericana bark collected in Puyang City, Henan Province, PR China. The isolates grew at 15-40 °C and pH 5-10. The optimum temperature and pH for growth were 30 °C and pH 8.0, respectively. Chemotaxonomic features included MK-10 and MK-11 as major menaquinones (type strain); predominating iso- and anteiso-branched cellular fatty acids; diphosphatidylglycerol and phosphatidylglycerol as major polar lipids (type strain); ornithine as the principal diamino acid of the cell-wall peptidoglycan (type strain); glycolyl type as cell-wall acyl type; and DNA G+C content of 66.8-67.6 mol%. These features were consistent with classification in the genus Microbacterium . Analysis of 16S rRNA gene sequence data indicated that the five isolates belonged to the genus Microbacterium and were closely related to Microbacterium halotolerans . A high 16S rRNA gene sequence similarity of 96.97% to M. halotolerans YIM 70130(T) was observed. The five isolates showed less than 96.20% 16S rRNA gene sequence similarity to the other species of the genus Microbacterium with validly published names. DNA-DNA relatedness of the five isolates with M. halotolerans JCM 13013(T) ranged from 35.62% to 44.36%. Considering the results of 16S rRNA gene sequence analysis and the physiological and biochemical characteristics, we propose that the five strains should be assigned to a novel species of the genus Microbacterium . The name proposed for the five strains is Microbacterium populi sp. nov., and the type strain is 10-107-8(T) ( =CFCC 11275(T) =KCTC 29152(T)).</AbstractText>
<CopyrightInformation>© 2015 IUMS.</CopyrightInformation>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Li</LastName>
<ForeName>Yong</ForeName>
<Initials>Y</Initials>
<AffiliationInfo><Affiliation>The Key Laboratory of State Forestry Administration on Forest Protection, Research Institute of Forest Ecology, Environment and Protection, Chinese Academy of Forestry, Beijing 100091, PR China.</Affiliation>
</AffiliationInfo>
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<Author ValidYN="Y"><LastName>Wang</LastName>
<ForeName>Tao</ForeName>
<Initials>T</Initials>
<AffiliationInfo><Affiliation>College of Forestry, Sichuan Agricultural University, Ya'an 625014, PR China.</Affiliation>
</AffiliationInfo>
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</AffiliationInfo>
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<Author ValidYN="Y"><LastName>Fang</LastName>
<ForeName>Wei</ForeName>
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<Author ValidYN="Y"><LastName>Xue</LastName>
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<Author ValidYN="Y"><LastName>Piao</LastName>
<ForeName>Chun-Gen</ForeName>
<Initials>CG</Initials>
<AffiliationInfo><Affiliation>The Key Laboratory of State Forestry Administration on Forest Protection, Research Institute of Forest Ecology, Environment and Protection, Chinese Academy of Forestry, Beijing 100091, PR China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Guo</LastName>
<ForeName>Min-Wei</ForeName>
<Initials>MW</Initials>
<AffiliationInfo><Affiliation>The Key Laboratory of State Forestry Administration on Forest Protection, Research Institute of Forest Ecology, Environment and Protection, Chinese Academy of Forestry, Beijing 100091, PR China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Zhu</LastName>
<ForeName>Tian-Hui</ForeName>
<Initials>TH</Initials>
<AffiliationInfo><Affiliation>College of Forestry, Sichuan Agricultural University, Ya'an 625014, PR China.</Affiliation>
</AffiliationInfo>
</Author>
</AuthorList>
<Language>eng</Language>
<DataBankList CompleteYN="Y"><DataBank><DataBankName>GENBANK</DataBankName>
<AccessionNumberList><AccessionNumber>KJ569787</AccessionNumber>
<AccessionNumber>KJ569788</AccessionNumber>
<AccessionNumber>KJ569789</AccessionNumber>
<AccessionNumber>KJ569790</AccessionNumber>
<AccessionNumber>KJ569791</AccessionNumber>
</AccessionNumberList>
</DataBank>
</DataBankList>
<PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType>
<PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType>
</PublicationTypeList>
<ArticleDate DateType="Electronic"><Year>2015</Year>
<Month>02</Month>
<Day>12</Day>
</ArticleDate>
</Article>
<MedlineJournalInfo><Country>England</Country>
<MedlineTA>Int J Syst Evol Microbiol</MedlineTA>
<NlmUniqueID>100899600</NlmUniqueID>
<ISSNLinking>1466-5026</ISSNLinking>
</MedlineJournalInfo>
<ChemicalList><Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D004269">DNA, Bacterial</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D005227">Fatty Acids</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D010457">Peptidoglycan</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D012336">RNA, Ribosomal, 16S</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>11032-49-8</RegistryNumber>
<NameOfSubstance UI="D024482">Vitamin K 2</NameOfSubstance>
</Chemical>
</ChemicalList>
<CitationSubset>IM</CitationSubset>
<MeshHeadingList><MeshHeading><DescriptorName UI="D000192" MajorTopicYN="N">Actinomycetales</DescriptorName>
<QualifierName UI="Q000145" MajorTopicYN="Y">classification</QualifierName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
<QualifierName UI="Q000302" MajorTopicYN="N">isolation & purification</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D015373" MajorTopicYN="N">Bacterial Typing Techniques</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D001482" MajorTopicYN="N">Base Composition</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D002681" MajorTopicYN="N">China</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D004269" MajorTopicYN="N">DNA, Bacterial</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D005227" MajorTopicYN="N">Fatty Acids</DescriptorName>
<QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D008969" MajorTopicYN="N">Molecular Sequence Data</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D009693" MajorTopicYN="N">Nucleic Acid Hybridization</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D010457" MajorTopicYN="N">Peptidoglycan</DescriptorName>
<QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D010802" MajorTopicYN="Y">Phylogeny</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D024301" MajorTopicYN="N">Plant Bark</DescriptorName>
<QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName>
<QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D012336" MajorTopicYN="N">RNA, Ribosomal, 16S</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D024482" MajorTopicYN="N">Vitamin K 2</DescriptorName>
<QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName>
</MeshHeading>
</MeshHeadingList>
</MedlineCitation>
<PubmedData><History><PubMedPubDate PubStatus="entrez"><Year>2015</Year>
<Month>2</Month>
<Day>14</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="pubmed"><Year>2015</Year>
<Month>2</Month>
<Day>14</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="medline"><Year>2015</Year>
<Month>10</Month>
<Day>3</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
</History>
<PublicationStatus>ppublish</PublicationStatus>
<ArticleIdList><ArticleId IdType="pubmed">25678677</ArticleId>
<ArticleId IdType="doi">10.1099/ijs.0.000117</ArticleId>
</ArticleIdList>
</PubmedData>
</pubmed>
<affiliations><list><country><li>République populaire de Chine</li>
</country>
<settlement><li>Pékin</li>
</settlement>
</list>
<tree><country name="République populaire de Chine"><noRegion><name sortKey="Li, Yong" sort="Li, Yong" uniqKey="Li Y" first="Yong" last="Li">Yong Li</name>
</noRegion>
<name sortKey="Fang, Wei" sort="Fang, Wei" uniqKey="Fang W" first="Wei" last="Fang">Wei Fang</name>
<name sortKey="Guo, Min Wei" sort="Guo, Min Wei" uniqKey="Guo M" first="Min-Wei" last="Guo">Min-Wei Guo</name>
<name sortKey="Piao, Chun Gen" sort="Piao, Chun Gen" uniqKey="Piao C" first="Chun-Gen" last="Piao">Chun-Gen Piao</name>
<name sortKey="Wang, Tao" sort="Wang, Tao" uniqKey="Wang T" first="Tao" last="Wang">Tao Wang</name>
<name sortKey="Wang, Tao" sort="Wang, Tao" uniqKey="Wang T" first="Tao" last="Wang">Tao Wang</name>
<name sortKey="Xue, Han" sort="Xue, Han" uniqKey="Xue H" first="Han" last="Xue">Han Xue</name>
<name sortKey="Zhu, Tian Hui" sort="Zhu, Tian Hui" uniqKey="Zhu T" first="Tian-Hui" last="Zhu">Tian-Hui Zhu</name>
</country>
</tree>
</affiliations>
</record>

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Microbacterium populi sp. nov., isolated from Populus×euramericana bark.

Microbacterium populi sp. nov., isolated from Populus×euramericana bark.

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Abstract

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